PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87932.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21020.5 Da    PI: 10.2304
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.54.5e-10949141
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                k+ie k +r vt+sk ++g++KKA+ L    ++ vavi f 
  RWR87932.1  9 KKIEGKQKRFVTLSKKKEGLFKKAQKLALDFGVVVAVIGFT 49
                689*************************9999999999775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MGKRKIEMKK IEGKQKRFVT LSKKKEGLFK KAQKLALDFG VVVAVIGFTV GGRPFSFGSS  60
SVDDIIDKYD QNHRLQFTEQ EKIHTVIHQE KSNIKLINSE GSIGNELMEY ASALTMLKDM  120
PVQTMAGISQ KNNCMDDHSI VKAKKETMGL LWTHALAEVF RLGSRAEKDT LTLILLRGRS  180
KTREGCC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-15M-type_MADS family protein