PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88076.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ZF-HD

Protein Properties

Length: 946aa MW: 108072 Da PI: 7.3104

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.8	1.5e-29	27	82	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY eC+kNhAa++Gg a+DGC+Efm+s ge+gt+ al+CaACgCHRnFHR e ++ RWR88076.1 27 GVRYGECQKNHAANMGGFALDGCREFMAS-GEDGTSGALRCAACGCHRNFHRTELDN 82 79************************9.999*****************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence
MKKHQQASRK GDEPQRSKGG SSSMRRGVRY GECQKNHAAN MGGFALDGCR EFMASGEDGT 60 SGALRCAACG CHRNFHRTEL DNEETNDLKD KEMASEDAAA VMLSGGSFEE MRQRIWECLK 120 DPKVKRFSFH GWEGVGRSVF FRQVTDELSK QAKSHDEEAD EEGRSDTLYQ IVWVRTPGSV 180 RDIRTSISKA MPNADFVTIG ERNYYNIPNQ KILLVLDDLR QSIDLDDVGF SSWEYMVWPG 240 SKVVITSHSK KIWSEMKSNV NIEGSWEGLS DDEAWELLRS ETTDMANSLA TFNINIGGDA 300 LMQCYTYLFL FLDGTPPTDL VPIWKTERFI GTFESLYKLI TAAQSIVDMF QNRAMILVEG 360 SGILKVSKSI VSKVVPILNR QGRCLVRCGL ELEEAPKVEE WEQDDLKRIS LAGNIISALT 420 TQVGRPPNAP QLSTLILSKN PLSQGVSDDF FHNMQGLRVL DLSSTDIKSL PSSLSTLTNL 480 RSLCLARCRH LETLPIHLLH ALKNLEALLL RGSPLPKLIQ LSLDMMQHLY RLSIDDASNL 540 TQLSLRGCRS FEVLHPPKDL DILDLSSTKI SEFDDFMFHK MTRLRRLDLL DTKHLKVVPW 600 HDIDQLPQTL NWDHCSNHSP REELHTNQGY RISVSDDKIF EYLSKDSKLW EEYFKKFRFS 660 VVSCDQRQQQ QPKDTKYPFE RTHFIYRGIF EAKTKYFTQF PEFTRSYDRC LEIGSTNDVP 720 YGIRGVLYHT EFLSLCSNNS IIRLSQLGVE NMDSLIECRL EKCLNMQHLI TTRRTTSNVE 780 ALSRIEILLV FDLTNLKSLC RGTLGEGSFA RLKHLCLEHC YRLSTLFSSS VCLEKLEKLE 840 IKFCYKLESL FEESVEGQDV FPQLKELYLL KLPKLKCTCN GNLPALEKLK VHGCRLLHKL 900 PLPIATGNQL NTVVIGGHQE WKRNLKWEEQ LINQGVKLKV PRAFKV

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence

MKKHQQASRK GDEPQRSKGG SSSMRRGVRY GECQKNHAAN MGGFALDGCR EFMASGEDGT  60
SGALRCAACG CHRNFHRTEL DNEETNDLKD KEMASEDAAA VMLSGGSFEE MRQRIWECLK  120
DPKVKRFSFH GWEGVGRSVF FRQVTDELSK QAKSHDEEAD EEGRSDTLYQ IVWVRTPGSV  180
RDIRTSISKA MPNADFVTIG ERNYYNIPNQ KILLVLDDLR QSIDLDDVGF SSWEYMVWPG  240
SKVVITSHSK KIWSEMKSNV NIEGSWEGLS DDEAWELLRS ETTDMANSLA TFNINIGGDA  300
LMQCYTYLFL FLDGTPPTDL VPIWKTERFI GTFESLYKLI TAAQSIVDMF QNRAMILVEG  360
SGILKVSKSI VSKVVPILNR QGRCLVRCGL ELEEAPKVEE WEQDDLKRIS LAGNIISALT  420
TQVGRPPNAP QLSTLILSKN PLSQGVSDDF FHNMQGLRVL DLSSTDIKSL PSSLSTLTNL  480
RSLCLARCRH LETLPIHLLH ALKNLEALLL RGSPLPKLIQ LSLDMMQHLY RLSIDDASNL  540
TQLSLRGCRS FEVLHPPKDL DILDLSSTKI SEFDDFMFHK MTRLRRLDLL DTKHLKVVPW  600
HDIDQLPQTL NWDHCSNHSP REELHTNQGY RISVSDDKIF EYLSKDSKLW EEYFKKFRFS  660
VVSCDQRQQQ QPKDTKYPFE RTHFIYRGIF EAKTKYFTQF PEFTRSYDRC LEIGSTNDVP  720
YGIRGVLYHT EFLSLCSNNS IIRLSQLGVE NMDSLIECRL EKCLNMQHLI TTRRTTSNVE  780
ALSRIEILLV FDLTNLKSLC RGTLGEGSFA RLKHLCLEHC YRLSTLFSSS VCLEKLEKLE  840
IKFCYKLESL FEESVEGQDV FPQLKELYLL KLPKLKCTCN GNLPALEKLK VHGCRLLHKL  900
PLPIATGNQL NTVVIGGHQE WKRNLKWEEQ LINQGVKLKV PRAFKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	3e-27	ZF-HD family protein