PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88094.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 357aa MW: 40339.1 Da PI: 5.3607

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g+W+t ++ g+ R++k+c++rw +yl RWR88094.1 14 KGPWTQEEDQKLMDYIQKHGHGSWRTLPKNAGLARCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.5	2.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ RWR88094.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MGRAPCCDKN GLKKGPWTQE EDQKLMDYIQ KHGHGSWRTL PKNAGLARCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILG SSIYNPTQLH LSRLLGIDPL VNSELLRLAS NILSSQCNNL 180 NLLPQSLQEN DQFSNPQIQN QFSSLVQTQQ LQNPIQEIPS CTTANTFVSD PQLMQANVDQ 240 ISSNPIDFPG QNVQSDLYQD NGVPCSLDPN FMPNLNYGYF NSDQSIVDPS PESSDFQLNH 300 NQNFNFASVL STPASSPMTL NSSSTHINSS TEDERDSYCS NMLKFEIPDL LDMSDFM

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MGRAPCCDKN GLKKGPWTQE EDQKLMDYIQ KHGHGSWRTL PKNAGLARCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSILG SSIYNPTQLH LSRLLGIDPL VNSELLRLAS NILSSQCNNL  180
NLLPQSLQEN DQFSNPQIQN QFSSLVQTQQ LQNPIQEIPS CTTANTFVSD PQLMQANVDQ  240
ISSNPIDFPG QNVQSDLYQD NGVPCSLDPN FMPNLNYGYF NSDQSIVDPS PESSDFQLNH  300
NQNFNFASVL STPASSPMTL NSSSTHINSS TEDERDSYCS NMLKFEIPDL LDMSDFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-104	MYB family protein