PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88190.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 486aa MW: 53749.9 Da PI: 5.0193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88190.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.6e-05	383	415	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ L++l+ + +K + a++L +A++YIk L RWR88190.1 383 GDRITALQQLVSPF-----GKTDTASVLFEAIDYIKFL 415 57889999999998.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MLGDLVAMAD DRICGGNWWN SSRPAFSGLS SPCSTAPSDL GGFGWTEIAR SCEEPVSISD 60 SSMVFRDAQK AQTPDSAGSG GVLMDSTLQM AGFGLSQQMD WNQALLRSSG RAESNFHDLL 120 QEDSNSVPNF RQETVMESIQ VQKDWSPKDF MGSGEEASAN VFKQINQSLN LDQPRLNSTE 180 DCVVTCQGLP ANSFPMTSAP FGSPSTLLQG LFDSNLQPQQ AIFDNRSINY MNSNDFSPSW 240 PKFSQFLNPS TPKQQPSNQL QFSNNTPFWN ASATSMSNVR SNFYPFPHNQ FLTHNFEEKP 300 NCSNLSVKVN IQSSTDIIRS ILASLNSKMN FLFILFQPNM DEIRDSSSTT KKNNNESAMK 360 RPRIETPSPV PTFKACIWKE KLGDRITALQ QLVSPFGKTD TASVLFEAID YIKFLHEQVN 420 VLSTPYMKSG APMQHQQNSD KGKDGEGPKQ DLRSRGLCLV PISSTYTVTN EGAPDIWTPT 480 FGGSFR

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MLGDLVAMAD DRICGGNWWN SSRPAFSGLS SPCSTAPSDL GGFGWTEIAR SCEEPVSISD  60
SSMVFRDAQK AQTPDSAGSG GVLMDSTLQM AGFGLSQQMD WNQALLRSSG RAESNFHDLL  120
QEDSNSVPNF RQETVMESIQ VQKDWSPKDF MGSGEEASAN VFKQINQSLN LDQPRLNSTE  180
DCVVTCQGLP ANSFPMTSAP FGSPSTLLQG LFDSNLQPQQ AIFDNRSINY MNSNDFSPSW  240
PKFSQFLNPS TPKQQPSNQL QFSNNTPFWN ASATSMSNVR SNFYPFPHNQ FLTHNFEEKP  300
NCSNLSVKVN IQSSTDIIRS ILASLNSKMN FLFILFQPNM DEIRDSSSTT KKNNNESAMK  360
RPRIETPSPV PTFKACIWKE KLGDRITALQ QLVSPFGKTD TASVLFEAID YIKFLHEQVN  420
VLSTPYMKSG APMQHQQNSD KGKDGEGPKQ DLRSRGLCLV PISSTYTVTN EGAPDIWTPT  480
FGGSFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	5e-56	bHLH family protein