PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR88232.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 403aa    MW: 45062.4 Da    PI: 6.5824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR88232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.43.2e-80443892322
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkfshlt 97 
                 ++lLl+cA a++s+d +laq++++ l++ as++gdp+qRl+  f++AL +r++r  +  ++   ++s ++  + ++++++++l  ++++ P+++f++ +
  RWR88232.1  44 EKLLLHCASALESNDVTLAQQVMWVLNNVASSAGDPNQRLTLWFLRALISRVSRVFPAAANFHgNSSLQR--TGTRSMTVTELagYVDLIPWHRFGFCA 140
                 689***************************************************8888887764444444..5555566666667************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............ 181
                  N+aI++a++g ++vHi+Df+i++G+QWp+L++aL++Rpeg+pslRiT+ +   ++    +   ee+g+rLa+fA++ +vpf+f+v+            
  RWR88232.1 141 SNSAIYQAIQGYNKVHILDFSITHGMQWPTLIDALSKRPEGAPSLRITVPSTRPPVpplLNVPSEEVGQRLANFAKSREVPFQFHVIggpllstssdir 239
                 *************************************************999777788989999*********************************99 PP

        GRAS 182 .......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                        +++ +++l+++ L++k++Eal+Vn++  l +l+d+ + +++    rd +L++++sl+P+++vvv++++d++s+s+  r++ +++y +  fd+
  RWR88232.1 240 veswtshHESLFAQLNPSFLDLKEDEALVVNCQNWLRYLPDDIGVSSEfqtLRDCFLEMIRSLNPHIFVVVDEDSDLDSPSLTSRITACFNYLWIPFDA 338
                 999988666688999*************************9876665566699********************************************** PP

        GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                 le+ lp++s +ri +E+  +g +i+n++  eg +r+er e+ ++  +rl++a
  RWR88232.1 339 LETFLPKDSPHRIEYEAD-IGHKIENIIGFEGLQRIERLESSARLVQRLKKA 389
                 ******************.*********************999888888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MKAELRGTPT PLSLPNPSLF NTPQESLSGA LKGCLGSLDG ACIEKLLLHC ASALESNDVT  60
LAQQVMWVLN NVASSAGDPN QRLTLWFLRA LISRVSRVFP AAANFHGNSS LQRTGTRSMT  120
VTELAGYVDL IPWHRFGFCA SNSAIYQAIQ GYNKVHILDF SITHGMQWPT LIDALSKRPE  180
GAPSLRITVP STRPPVPPLL NVPSEEVGQR LANFAKSREV PFQFHVIGGP LLSTSSDIRV  240
ESWTSHHESL FAQLNPSFLD LKEDEALVVN CQNWLRYLPD DIGVSSEFQT LRDCFLEMIR  300
SLNPHIFVVV DEDSDLDSPS LTSRITACFN YLWIPFDALE TFLPKDSPHR IEYEADIGHK  360
IENIIGFEGL QRIERLESSA RLVQRLKKAN SSVFPTVRRL QWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-94GRAS family protein