PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR88359.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 582aa    MW: 65368.6 Da    PI: 5.631
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR88359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.53.5e-1292135822374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL+ecA+a+ ++ +   ++l  + +  +s +g+p+qRl ay++e L ar  +s++++y++l+++e +   s++ l++++++++++P++kf++++aN 
  RWR88359.1 213 KQLLIECARALLENRMDDFEKLTREARSAVSISGEPIQRLGAYMLESLVARKEGSGNNIYRTLRCREPT---SKDLLSYMHILYDICPYFKFGYMAANG 308
                 799*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea+ +e+rvHiiDf+i qG+QW++L+qaLa R+++pp++RiTg+++p s   + + l+ +g+rLa + e+++vp+ef+  v    +d++ e+L+v+
  RWR88359.1 309 AIAEAIRNEDRVHIIDFQIAQGTQWVTLIQALAGRSGSPPHVRITGIDDPVSLyaRGDGLQVVGKRLAAMSEKFNVPLEFHE-VPVFGQDVTREMLDVQ 406
                 *************************************************9998999**************************.68899*********** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEa++Vn+ lqlh+++desv+++++rd +L+lvkslsPkv ++veqe+++n+++Fl rf+e+l+yysa+f+s++++lpr+s+eri+vE+++l+++ivn
  RWR88359.1 407 PGEAIVVNFPLQLHHTPDESVDVNNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFLMRFIETLDYYSAMFESIDVTLPRDSKERINVEQQCLAKDIVN 505
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vvaceg++r+erhe l+kW++rl++aGF+p+pls+++++ +k+ll+ ++s+ y++ e++g+l+lgWk+r+L+s+SaW+
  RWR88359.1 506 VVACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSFVNSVIKSLLSCYSSN-YTLTEKDGALLLGWKSRNLISASAWQ 582
                 **********************************************99977.*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MDSDQLIGYS FPGIEVSHEN IPTHNLPRSE WMLGPMKFDS RCSSDSPLSA PCDYDTFSTT  60
LSNSQEHYSS VDNFSGISPS HNFSLETESS LQRSPSNFQE VHLVGRSLQQ NAVYSMKNAL  120
QKLESDLMGP DTDEVSTPSS ALDENQQPEP SKQKSRAWDV SGSHQEKSLI VRPQQQISGR  180
HQDMDRGGGG GQRDKRQRVM ETHLQDMPQL DIKQLLIECA RALLENRMDD FEKLTREARS  240
AVSISGEPIQ RLGAYMLESL VARKEGSGNN IYRTLRCREP TSKDLLSYMH ILYDICPYFK  300
FGYMAANGAI AEAIRNEDRV HIIDFQIAQG TQWVTLIQAL AGRSGSPPHV RITGIDDPVS  360
LYARGDGLQV VGKRLAAMSE KFNVPLEFHE VPVFGQDVTR EMLDVQPGEA IVVNFPLQLH  420
HTPDESVDVN NPRDGLLRLV KSLSPKVTTL VEQESNTNTT PFLMRFIETL DYYSAMFESI  480
DVTLPRDSKE RINVEQQCLA KDIVNVVACE GKDRVERHEL LGKWKSRLTM AGFRPYPLSS  540
FVNSVIKSLL SCYSSNYTLT EKDGALLLGW KSRNLISASA WQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-178GRAS family protein