PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88449.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 440aa MW: 48275.9 Da PI: 6.6553

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88449.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.2e-17	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l RWR88449.1 27 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 74 79******************************************9986 PP
2	Myb_DNA-binding	48.4	2.2e-15	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++ +lG++ W++ a+ ++ gRt++++k++w++ RWR88449.1 80 KGSFSAEEERLILELHSKLGNK-WARMASQLP-GRTDNEIKNYWNT 123 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MSPNSMSGGD DSSSGGSGGG RGPALKKGPW TAAEDAILME YVKKHGEGNW NAVQKNSGLS 60 RCGKSCRLRW ANHLRPNLKK GSFSAEEERL ILELHSKLGN KWARMASQLP GRTDNEIKNY 120 WNTRIKRRQR QGLPLYPPDI QRQAAYHHHR QHPSHSLAIP SLQQKNQFSS PGLPLLDPMN 180 FSTVPMPLLT TTTQNPHQSL FPPAPLLIHN RFKRLRENTF MGSSDFSLSY SSSPLPLFQH 240 NLQNQHQHQH HPFVLGGFEP NGLATSMKME LPSNQLAEPA TASNSNSGLL DALLQEAQVL 300 SGDLGKEELL GEAVDGKCCW VGDSFPTGQV LFSESGIATS QLGSTSAHSP SIGIEAKKEP 360 TEENDSVDRD LSALFDIIPA SMPMVSEWYN DNGEMSNAQS SASDDNIGLE MQHLTSSLTV 420 SNEQDWSLSS CTWNNMPGIC

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MSPNSMSGGD DSSSGGSGGG RGPALKKGPW TAAEDAILME YVKKHGEGNW NAVQKNSGLS  60
RCGKSCRLRW ANHLRPNLKK GSFSAEEERL ILELHSKLGN KWARMASQLP GRTDNEIKNY  120
WNTRIKRRQR QGLPLYPPDI QRQAAYHHHR QHPSHSLAIP SLQQKNQFSS PGLPLLDPMN  180
FSTVPMPLLT TTTQNPHQSL FPPAPLLIHN RFKRLRENTF MGSSDFSLSY SSSPLPLFQH  240
NLQNQHQHQH HPFVLGGFEP NGLATSMKME LPSNQLAEPA TASNSNSGLL DALLQEAQVL  300
SGDLGKEELL GEAVDGKCCW VGDSFPTGQV LFSESGIATS QLGSTSAHSP SIGIEAKKEP  360
TEENDSVDRD LSALFDIIPA SMPMVSEWYN DNGEMSNAQS SASDDNIGLE MQHLTSSLTV  420
SNEQDWSLSS CTWNNMPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	6e-70	MYB family protein