PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88451.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 438aa MW: 48060.6 Da PI: 6.5084

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.2e-17	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l RWR88451.1 27 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 74 79******************************************9986 PP
2	Myb_DNA-binding	48.4	2.2e-15	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++ +lG++ W++ a+ ++ gRt++++k++w++ RWR88451.1 80 KGSFSAEEERLILELHSKLGNK-WARMASQLP-GRTDNEIKNYWNT 123 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MSPNSTSGGD DSSSGGSGGG RGPALKKGPW TAAEDAILME YVKKHGEGNW NAVQKNSGLS 60 RCGKSCRLRW ANHLRPNLKK GSFSAEEERL ILELHSKLGN KWARMASQLP GRTDNEIKNY 120 WNTRIKRRQR QGLPLYPPDI QRQAAYHHHR QHPSHSLAIP SLQQKNQFSS PGLPLLDPMN 180 FSTVPMPLLT TTTQNPHQSL FPPAPLSIHN RFKRLRENTF MGSSDFSLSY SSSPLPLFQH 240 NLQNQHQHHP FVLGGFEPNG LATSMKMELP SNQFAEPATA SNSNSGLLDA LLQEAQVLSG 300 DLGKEELLGE AVDGKCCWVG DSFPTGQVLF SESGIATSQL ESTSAHSPSI GIEAKKEPTE 360 ENDSVDRDLS ALFDIIPASM PMVSEWYNDN GEMSNAQSSA SDDNIGLEMQ HLTSSLTVSN 420 EQDWSLSSCT WNNMPGIC

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MSPNSTSGGD DSSSGGSGGG RGPALKKGPW TAAEDAILME YVKKHGEGNW NAVQKNSGLS  60
RCGKSCRLRW ANHLRPNLKK GSFSAEEERL ILELHSKLGN KWARMASQLP GRTDNEIKNY  120
WNTRIKRRQR QGLPLYPPDI QRQAAYHHHR QHPSHSLAIP SLQQKNQFSS PGLPLLDPMN  180
FSTVPMPLLT TTTQNPHQSL FPPAPLSIHN RFKRLRENTF MGSSDFSLSY SSSPLPLFQH  240
NLQNQHQHHP FVLGGFEPNG LATSMKMELP SNQFAEPATA SNSNSGLLDA LLQEAQVLSG  300
DLGKEELLGE AVDGKCCWVG DSFPTGQVLF SESGIATSQL ESTSAHSPSI GIEAKKEPTE  360
ENDSVDRDLS ALFDIIPASM PMVSEWYNDN GEMSNAQSSA SDDNIGLEMQ HLTSSLTVSN  420
EQDWSLSSCT WNNMPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	4e-70	MYB family protein