PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR88468.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 287aa    MW: 31744.8 Da    PI: 3.9911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR88468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.2e-131559649
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyey 49
                k   q  f++R +g++KKA+EL +LC+ ++avi++s+ tgk  ++
  RWR88468.1 15 KKFDQLRFTRRCKGLFKKAQELNILCGSDIAVIVISNgTGKATTF 59
                5556788*****************************856777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGKRKLEIES KKEEKKFDQL RFTRRCKGLF KKAQELNILC GSDIAVIVIS NGTGKATTFG  60
SPDPNSVINR YRSHKTANCQ SELQNSILAR TSVEQMIMND GNHQEKMMMI EDLDLDLEPR  120
EDGSLPNLIS SSSSYERGLD DNNDDYWLSL DVDRFLEEIE EEDVNEGSIS ERVLAGLMTE  180
IPSSPSFSTI GCGAGQFAPS NGYGLGDTLS SDEFDPTFDV GQFLNEDGGG GGGPEQDEYG  240
SVTNSISSSS SCECGFDDND WLSIDVNKFF EDDEFVRMWV GAVSDQY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-10M-type_MADS family protein