PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR88527.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 524aa    MW: 57934.4 Da    PI: 4.5714
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR88527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3703.1e-1131475171374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                 lv+lLl+cAeav  +d++la+++L+++   a+p gd++qR+ ++f+ +L++rl+  +  ++++++p   ++      +e++  ++l+++++P++ f+++
  RWR88527.1 147 LVHLLLACAEAVGCRDTQLATSVLSQIWASANPWGDSLQRVSFCFAMGLKSRLTYfHNVGTSATFPNVGADAPLitREEKIEGFNLLYQTTPYIAFGFM 245
                 68****************************************************9666677777766555544356889999999************** PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak.rledlelee 193
                 +aN+aI +a++g++ +HiiD+++++ lQWp+L++ LasRpeg+p+lRiTg+g    g s  ele+  + L++ A+ lg+++ef+++v+  + + l++e+
  RWR88527.1 246 AANEAICQAAQGKDSLHIIDLGMEHALQWPSLIRNLASRPEGQPKLRITGIGV---GpSLSELEASMKLLTDDASFLGMQLEFHAIVEPsTPSLLNIES 341
                 ****************************************************9...3399*************************9666588999**** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 L+++ g+al Vn++l+lh  ++es  + +   ++L+++++l+P+++++veq+++hn++ Fl rfle+l+yysa+fdslea+lpr s +rik+Er  +g+
  RWR88527.1 342 LELRDGDALFVNSSLHLHMYVKESRGSLK---AILQAIRKLNPTLLTLVEQDSNHNGPFFLGRFLESLHYYSAIFDSLEASLPRLSPQRIKIERSQFGE 437
                 *******************9977776666...9****************************************************************** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ei+n+va+eg++r+erhe++ +Wr++l++aGF+pv+l++  ++qa++ll+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  RWR88527.1 438 EIRNIVAHEGSDRVERHERADQWRRQLGRAGFQPVALKS--MSQARMLLSVYGCDGYTLASEKGCLLLGWKGRPIMLASAWQ 517
                 ************************************976..99**************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    
MDGPLSVPLQ ESLYNNMAIR QFCVARQEHE EQQEHWDDTP NSIEMWSQWD TTSSPCLGTL  60
EQDDFADSFI NTDLYGEDGG VSAGQTCQAP DEYEMSETPN TMFNGELQMA DVEELELGSP  120
AEESDMGVMV LPGVSGAPHG VDQGLHLVHL LLACAEAVGC RDTQLATSVL SQIWASANPW  180
GDSLQRVSFC FAMGLKSRLT YFHNVGTSAT FPNVGADAPL ITREEKIEGF NLLYQTTPYI  240
AFGFMAANEA ICQAAQGKDS LHIIDLGMEH ALQWPSLIRN LASRPEGQPK LRITGIGVGP  300
SLSELEASMK LLTDDASFLG MQLEFHAIVE PSTPSLLNIE SLELRDGDAL FVNSSLHLHM  360
YVKESRGSLK AILQAIRKLN PTLLTLVEQD SNHNGPFFLG RFLESLHYYS AIFDSLEASL  420
PRLSPQRIKI ERSQFGEEIR NIVAHEGSDR VERHERADQW RRQLGRAGFQ PVALKSMSQA  480
RMLLSVYGCD GYTLASEKGC LLLGWKGRPI MLASAWQVHS NANI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-82GRAS family protein