PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR88619.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family NF-YC
Protein Properties Length: 317aa    MW: 35252.2 Da    PI: 5.8001
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR88619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.31.5e-551392431102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   i+++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  RWR88619.1 139 QLQAFWASQmheIDQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 237
                 89*****99777899************************************************************************************ PP

       NF-YC  97 prdelk 102
                 prdelk
  RWR88619.1 238 PRDELK 243
                 ***975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MGGKYLTWHR IMEICCGASA LADEEAVLEP LQFQNILDFP PIIFLSSVMS KDPAKQKVEQ  60
GTSYILTMDQ SAPQTQPVIG VVTGAAQIAY ATPAYQAAPV VGAMASPTQP SSSFPAQHQL  120
AYQQVQHFHQ QQQQQQQQQL QAFWASQMHE IDQTTDFKNH SLPLARIKKI MKADEDVRMI  180
SAEAPVVFAK ACEMFILELT LRSWIHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRD  240
ELKEEGLGIP RAALPAVGAP TESIPYYYVP SQVASPGMIV GKPVDHAAAA IYAQQPRPVY  300
MSWQQPQPQQ HQMPDSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212218RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.11e-73NF-YC family protein