PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88655.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 400aa MW: 44510.6 Da PI: 4.8305

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l +++++G g+W++ ++ g+ R++k+c++rw +yl RWR88655.1 16 KGPWTPAEDMRLMAYIHKHGHGNWRALPKQAGLLRCGKSCRLRWINYL 63 79****************************99**********97 PP
2	Myb_DNA-binding	56.6	5.9e-18	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l RWR88655.1 69 RGNFTPEEEETIIKLHELLGNK-WSKIASRLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MGRGRAPCCE KVGLKKGPWT PAEDMRLMAY IHKHGHGNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTPEEEETI IKLHELLGNK WSKIASRLPG RTDNEIKNVW NTHLKKRLVS 120 KESNPTSHKS KESSSSSSSN SSVSYCDQGE GIGHEEQVNT VINSKECDAV LMEERIEIAI 180 EPDIWDMLED GPCQLQETND NELKDKWDTD SRSLSKGPNL LIDGPKQSLS PSSSSSTSNS 240 YGSYSIPTDG KGPAEQTVPP LETGGLVDVL DIEHQEMKND QSNLETATTS LHLNLDFWGM 300 LDDELCFFPS TTVGPMGDQG LHQHTSEEEP KEIDSKMWIS YLENELGLWA TGGDDQQSQT 360 NSTLGSLAPC PHYDGKLEVE IDPVITYFQS HPSSPAIFSL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MGRGRAPCCE KVGLKKGPWT PAEDMRLMAY IHKHGHGNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEEETI IKLHELLGNK WSKIASRLPG RTDNEIKNVW NTHLKKRLVS  120
KESNPTSHKS KESSSSSSSN SSVSYCDQGE GIGHEEQVNT VINSKECDAV LMEERIEIAI  180
EPDIWDMLED GPCQLQETND NELKDKWDTD SRSLSKGPNL LIDGPKQSLS PSSSSSTSNS  240
YGSYSIPTDG KGPAEQTVPP LETGGLVDVL DIEHQEMKND QSNLETATTS LHLNLDFWGM  300
LDDELCFFPS TTVGPMGDQG LHQHTSEEEP KEIDSKMWIS YLENELGLWA TGGDDQQSQT  360
NSTLGSLAPC PHYDGKLEVE IDPVITYFQS HPSSPAIFSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	7e-70	MYB family protein