PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88706.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LSD

Protein Properties

Length: 214aa MW: 22845.7 Da PI: 9.0276

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35	2.4e-11	52	76	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA +V+Ca+C ++ RWR88706.1 52 CNGCRSVLLYPRGAANVCCAICRAI 76 **********************986 PP
2	zf-LSD1	42.6	1e-13	90	114	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+t+L+Y+rGA sVRC++C+t+ RWR88706.1 90 CRGCQTVLMYTRGAASVRCSCCQTI 114 9**********************97 PP
3	zf-LSD1	48.5	1.4e-15	124	148	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+CalC+ V RWR88706.1 124 CGQCHTTLMYPYGAPSVKCALCQYV 148 ***********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MPKQLKGQIS HILRVSIGAT NHGRFGLSLF FLPRSIWAFS VLFGGMQSQL VCNGCRSVLL 60 YPRGAANVCC AICRAITSVP PAVEIAQLVC RGCQTVLMYT RGAASVRCSC CQTINFASPA 120 HVNCGQCHTT LMYPYGAPSV KCALCQYVTN VGMSNMRVPI PVQRQNGATP TTHLPSTSAP 180 QSHGQTVVVE NPMTVDESGK LVSNVVVGVT TDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	3e-67	LSD family protein