PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88759.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 311aa MW: 34664.3 Da PI: 8.8038

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.9	7.4e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ +re+a++sl+yeAear+rdPvyG+vg+i++lq+ l++ +++l ++k+ RWR88759.1 7 PCAACKLLRRKCTQECVFAPYFPPDQPNKFANVHKVFGASNVAKLLNELSAPQREEAVNSLAYEAEARLRDPVYGCVGFISHLQHSLKEIQHDLLTAKK 105 7********************************************************************************************999887 PP DUF260 100 e 100 e RWR88759.1 106 E 106 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MASSNSPCAA CKLLRRKCTQ ECVFAPYFPP DQPNKFANVH KVFGASNVAK LLNELSAPQR 60 EEAVNSLAYE AEARLRDPVY GCVGFISHLQ HSLKEIQHDL LTAKKELSSY IGPSAMLPMA 120 QPHYPILHHP HHLGNSSSSM AAPFGNMQMG LGLQPPSQTL TFREQQHQQQ MLEAQQLAMA 180 ALAVREEQHE MMRNYEQQQQ QPHQEVVRYN RFDGGGNNSG HGFSQMGAHS QLALVPFDNP 240 FQIKSTCISN HTTIKNQRAM IVKAASAHLL EVLRDSFRSS LSPRPSMGFE LLIHRRNGNG 300 NSESSTRTSI K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-67	LBD family protein