PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89122.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19378 Da    PI: 5.1184
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.61.4e-22952144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                k+ie+k +rqv fskRr+g++KKA+EL++LCda+va+i fs  g
  RWR89122.1  9 KKIEDKNKRQVCFSKRRQGLFKKASELCTLCDAQVAIIAFSGGG 52
                68**************************************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MGKRKIEIKK IEDKNKRQVC FSKRRQGLFK KASELCTLCD AQVAIIAFSG GGRPFVFGHP  60
TVDTVINRFL DDKVVNEKQQ LQLPSNEFNG CECGDQVFNL LDEGVDHQSV EELMQLKQEL  120
EGLREKVKVR MKDKSTAASS AADGPQSGQL VTMFDEDEWI FGGLSEIDSA SYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-25M-type_MADS family protein