PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89306.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 172aa    MW: 18597.5 Da    PI: 8.2156
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.22.8e-38101101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+apyf +e+ + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v+ +l+lqqq+ +l+aela ++
  RWR89306.1  10 PCGACKFLRRKCVSGCVFAPYFDSEEgAGQFAAVHKVFGASNVSKLLLQIPLHKRLDAVITICYEAQARLRDPVYGCVANLLALQQQVVSLQAELACMQ 108
                 7*********************998879********************************************************************998 PP

      DUF260  99 ee 100
                 ++
  RWR89306.1 109 AH 110
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MSRNGCSSGP CGACKFLRRK CVSGCVFAPY FDSEEGAGQF AAVHKVFGAS NVSKLLLQIP  60
LHKRLDAVIT ICYEAQARLR DPVYGCVANL LALQQQVVSL QAELACMQAH LATSELPSLP  120
PLPLTVSDLP SASALPTSYD LSTLLDPQQM QSSWSVQQHL IGRHRSSPPF NK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.11e-48LBD family protein