PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89433.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 241aa MW: 27568.5 Da PI: 9.6949

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89433.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELS+LCdaeva+i+fss+gklye+ RWR89433.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSILCDAEVALIVFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	106.8	2.5e-35	77	171	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ + ++++++ ++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLqqLe+qLe +l+k R++K+++++eq+eel+kke++l ++nk+L++kle RWR89433.1 77 QDANISDRETQGWYQEVSKLKAKYESLQRSQRHLLGEDLGPLSVKELQQLERQLEVALSKARQRKTQIMMEQMEELRKKERQLGDINKQLKNKLE 171 55668999************************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSILCD AEVALIVFSS RGKLYEFGSV 60 GTNKTLERYQ RCCYNPQDAN ISDRETQGWY QEVSKLKAKY ESLQRSQRHL LGEDLGPLSV 120 KELQQLERQL EVALSKARQR KTQIMMEQME ELRKKERQLG DINKQLKNKL ETEGAFRGLQ 180 GSWESGAVVG NNTFSLHPSQ SGPMDCEPTL QIGYHPHFVP PEAAIPRTIA GESNFIQGWV 240 L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-109	MIKC_MADS family protein