PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89436.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 674aa    MW: 73942.8 Da    PI: 9.9146
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.21e-1083056742374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 ++l+++ A a+s+g++e a  +L+rl++ ++p+  d+ qRlaay++ AL +r++       +    ++ +e  sse+++a+++++e+sP++k+++++aN
  RWR89436.1 305 KQLVFDSAGAISEGKTETAAGILTRLKQVSNPRSgDAEQRLAAYMVGALLSRINPAE----SGGGGQPIAELCSSEHMMATQMLYEASPCFKLGFMAAN 399
                 5789999**********************888765*******************922....2233444444459************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +aIl+a+e+++++Hi+Dfdi+qG Q+++L++aLa+R++ +p+++iT++++p+s    + l+ + +rL+k+A+++g+ ++fnv ++ r +dl+ e++ ++
  RWR89436.1 400 HAILDATENQQKIHIVDFDIGQGSQYLTLIHALAERQRIKPTVKITAINDPNSInGPNGLQVVSDRLTKLADRVGIVLRFNV-LCMRASDLSRESIGCN 497
                 ***************************************************9998999************************.5999************ PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreiv 295
                 p+E+laVn++++l+++ desvs++++rde+L++vk+l P vv++veqe++ n+++Fl+rf e+  y+ alf+sl+a++ r+  ++ +++ +e+l+r++ 
  RWR89436.1 498 PDESLAVNFAFRLYKMADESVSTANPRDELLRVVKGLHPVVVTLVEQEMNANTAPFLARFGESWAYCRALFESLDATVTRDRpQKFKFLIEECLARKAA 596
                 *********************************************************************************965556677888****** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n va eg++r+er+e ++kWr+r+++aGF+p pls ++a+++++  ++++  g+  +eesg +++gW++r L+++S+Wr
  RWR89436.1 597 NSVAREGRDRVERCELFGKWRARMGMAGFQPRPLSGQIAESMRTRANQTH-SGFFAKEESGGICFGWMGRILTVASSWR 674
                 *************************************************9.99*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    
MQITKANGHR AGKHFKRPVG VARENLLQKN LLKVYISLSK RPSIGRSRRG REAITLGFHR  60
EKKKPFFGDF ARKAAMSSGY PGSDFYSHAG IGGAPAMNNS VRVQYRQQLG GILVDPSPSP  120
AIPQHPILAK RPLTDFERQQ QQAFFLLRSV KQRTHLTSPI SPLSPIDLSS ASPEISTTTS  180
SVRLGASPFR HLQYQQQQPP PPPPPNNLNS CNFSFSPVPN RFSVSTSEPD SDKNIRNCLQ  240
ELERQLLDDD EEDTSAVSAV TNSGWSETMQ NLMTPKPNPT SPTSSSSSTT TTSASSSPPS  300
SSSSKQLVFD SAGAISEGKT ETAAGILTRL KQVSNPRSGD AEQRLAAYMV GALLSRINPA  360
ESGGGGQPIA ELCSSEHMMA TQMLYEASPC FKLGFMAANH AILDATENQQ KIHIVDFDIG  420
QGSQYLTLIH ALAERQRIKP TVKITAINDP NSINGPNGLQ VVSDRLTKLA DRVGIVLRFN  480
VLCMRASDLS RESIGCNPDE SLAVNFAFRL YKMADESVST ANPRDELLRV VKGLHPVVVT  540
LVEQEMNANT APFLARFGES WAYCRALFES LDATVTRDRP QKFKFLIEEC LARKAANSVA  600
REGRDRVERC ELFGKWRARM GMAGFQPRPL SGQIAESMRT RANQTHSGFF AKEESGGICF  660
GWMGRILTVA SSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-131GRAS family protein