PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89528.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 768aa MW: 84089.5 Da PI: 6.4794

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.4e-16	25	69	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ RWR89528.1 25 RERWTEEEHSKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 69 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MSGTNSAGEE LLVKTRKPYT ITKQRERWTE EEHSKFLEAL KLYGRAWQRI EEHIGTKTAV 60 QIRSHAQKFF TKLEKESLTK GVPPGHAHDI DIPPPRPKRK PSNPYPRKTS VGSIPSSSPG 120 ARDVKPVTWI SSLCPSRQAL DLENDPPPED HPGIETCQRT KETPKDSNRS EVLNNFQEAP 180 SAFISPTRLT SVSIPEVLTK QCASSECVPP LKEINGPTTT DGSYLTVESK ANQKPGKTDI 240 SNTDLNISRC EGPILEDYSH PAHEKVAPEQ RTNEMKQQEK LDALSIETQS INCPTHEFVN 300 VAHTSSFDRT SPVTVSHHSG DQEIPNPFPI PPISPTTEQY VNSGRPTFYP SFPIPHPPFT 360 LFRNNHDSYR SFLNISSTFS GLIISTLLQN PAVHAAATVA ASFWPCADNS STDTLVGGCP 420 VRQTGQSPSL TAIVAATVAA ASAWWASHGM LPFYPSPHTS FAFPPTATTD IPTEGTTQVT 480 EDNKEITDGM PSYPAREDQR LLDPEFSTAL RAQAPATKPS PLPSPDSDEN GGESTHAAQQ 540 KASSHGQMTV PCPGMPDTDE GKTRKLLDRS SCGSNTTSSS EVETDALEKH AEGNEDSKEA 600 GDEPINRRCK NIGSNSDSWK EVSEEVVGRL AFQALFSREV LPQSFKPVHN LRNKALPRTS 660 DEEEKQKSSE KGKVLFKADI GNGIRVTPLD NPIFIDENES VTSDNTKKGP LTNMLAGHHG 720 KLKGFRTGFK PYKRCSMEVS EGSMVANSSK QSEEKSTKRI RLEGEAST

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MSGTNSAGEE LLVKTRKPYT ITKQRERWTE EEHSKFLEAL KLYGRAWQRI EEHIGTKTAV  60
QIRSHAQKFF TKLEKESLTK GVPPGHAHDI DIPPPRPKRK PSNPYPRKTS VGSIPSSSPG  120
ARDVKPVTWI SSLCPSRQAL DLENDPPPED HPGIETCQRT KETPKDSNRS EVLNNFQEAP  180
SAFISPTRLT SVSIPEVLTK QCASSECVPP LKEINGPTTT DGSYLTVESK ANQKPGKTDI  240
SNTDLNISRC EGPILEDYSH PAHEKVAPEQ RTNEMKQQEK LDALSIETQS INCPTHEFVN  300
VAHTSSFDRT SPVTVSHHSG DQEIPNPFPI PPISPTTEQY VNSGRPTFYP SFPIPHPPFT  360
LFRNNHDSYR SFLNISSTFS GLIISTLLQN PAVHAAATVA ASFWPCADNS STDTLVGGCP  420
VRQTGQSPSL TAIVAATVAA ASAWWASHGM LPFYPSPHTS FAFPPTATTD IPTEGTTQVT  480
EDNKEITDGM PSYPAREDQR LLDPEFSTAL RAQAPATKPS PLPSPDSDEN GGESTHAAQQ  540
KASSHGQMTV PCPGMPDTDE GKTRKLLDRS SCGSNTTSSS EVETDALEKH AEGNEDSKEA  600
GDEPINRRCK NIGSNSDSWK EVSEEVVGRL AFQALFSREV LPQSFKPVHN LRNKALPRTS  660
DEEEKQKSSE KGKVLFKADI GNGIRVTPLD NPIFIDENES VTSDNTKKGP LTNMLAGHHG  720
KLKGFRTGFK PYKRCSMEVS EGSMVANSSK QSEEKSTKRI RLEGEAST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	7e-43	MYB_related family protein