PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89585.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LSD

Protein Properties

Length: 125aa MW: 13427.4 Da PI: 5.5743

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89585.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.7	2.9e-11	36	60	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr l sYPrGA++VRC++C+t+ RWR89585.1 36 CGTCRELNSYPRGARRVRCSCCQTI 60 ***********************97 PP
2	zf-LSD1	46.5	6e-15	74	98	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GAp+V+C++C++V RWR89585.1 74 CGGCTVLLMYPYGAPLVKCSVCHFV 98 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence
MDAVMESSDA ESESAPPGFQ CLCPPPPLPE MGQVVCGTCR ELNSYPRGAR RVRCSCCQTI 60 NVVLEAHQTG NVKCGGCTVL LMYPYGAPLV KCSVCHFVTE IGVQNERPPL SVQQGQPPPI 120 DNPTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-34	LSD family protein