PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89741.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LSD

Protein Properties

Length: 133aa MW: 14157.8 Da PI: 8.3475

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.6	7.7e-12	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL Y++GA+sV+C++C+ V RWR89741.1 27 CSGCRNLLLYTPGATSVCCTVCNVV 51 ***********************98 PP
2	zf-LSD1	34.3	4e-11	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+t L+Y r A sV+C++C+tV RWR89741.1 66 CGGCHTQLMYIRSANSVQCPCCHTV 90 ************************9 PP
3	zf-LSD1	27.3	6e-09	104	128	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+Y rG +sV+Ca+C++V RWR89741.1 104 CGNCCMLLMYRRGGRSVKCAVCNFV 128 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence
MPVPIVPYST ALVACTPRIG AQRQLVCSGC RNLLLYTPGA TSVCCTVCNV VTSVPPSGAQ 60 MAQLICGGCH TQLMYIRSAN SVQCPCCHTV NLALEENQVA HVNCGNCCML LMYRRGGRSV 120 KCAVCNFVTS VRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-48	LSD family protein