PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89755.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 306aa    MW: 35005.9 Da    PI: 8.2805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89755.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.3e-201052244
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i +k +r+v fskRr+g++ KA+EL++LCda+va+i+fs  g
  RWR89755.1 10 MIRDKNKRHVCFSKRRKGLFQKASELCTLCDAQVAIIVFSGGG 52
                6999***********************************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGKEKIRKEM IRDKNKRHVC FSKRRKGLFQ KASELCTLCD AQVAIIVFSG GGRPFVFGHP  60
TADAVIDRFL SATDPVPPDA SHSSHSHSEL IFNRIAQLQQ HQKKKSQLPM KDEEFTDWWE  120
QELDLDEGVT CVEELERVKE RLESLRSKVL ERINRFYTAS SSSSSSAAAC GKSVCPPEAM  180
GTQSGPLVTM ADEDEWIYDC ANFRKNNIFI QSRAGNKEGR KKRQLTKTKF NASEWWDRVF  240
NIDGKGVDSV EELKQLEFVL ERLREKVPVR LKDKSGFTVS FQRLMVQNTY DVIIKMATEI  300
DGAEYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-26M-type_MADS family protein