PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89836.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C2H2
Protein Properties Length: 380aa    MW: 41920.9 Da    PI: 9.9458
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-06145168123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 ++Cp Cg++F  +s+L +H++t H
  RWR89836.1 145 FPCPTCGQVFQKSSHLDQHQSTkH 168
                 89*******************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    
MTTVKSFINR FTSLFLLLFH LGCFPIPTAA TTAKKRRSPS PSTEETRHKS LSLFSYLKPI  60
FSSFKKLSKT KAKTGPPPSH FDLPYPSSST RSSQHSITSP PPRSIPIITR KRSSGSLAES  120
DVVSADPQQP KRLSFSSSFQ GVDIFPCPTC GQVFQKSSHL DQHQSTKHAV VELLDGDSAR  180
NVVRIIFLGG WKGSGSRSPI IHRILKIHNG SKIVKRFEEY REAIKAKASR SGRRHERCIA  240
DGNELLRFHC STFVCSLGEG VCGQEWCGVC GIIRGGFSPK LEGISTMGSS ERAHWSIPED  300
MEEEFSFMNV RRAMLLCRVV AGRVASHPPA AHDHDHDKED GGFDSVAVAS RGSGAHREGE  360
ELLVFNPRAV LPCFVIIYTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13469KKRRSPSPSTEETRHKSLSLFSYLKPIFSSFKKLSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.18e-84C2H2 family protein