PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89910.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 447aa MW: 50357.1 Da PI: 8.466

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++lv++++++G g+W++ ++ g++R++k+c++rw +yl RWR89910.1 14 KGPWTPGEDKRLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.9	2.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++teE++ +++++ lG++ W++Ia +++ gRt++++k++w+++ RWR89910.1 67 RGKFSTEEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTH 111 89******************.*****.**********97 PP
3	Myb_DNA-binding	59.8	5.7e-19	323	370	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv++++++G g+W++ ++ g++R++k+c++rw +yl RWR89910.1 323 KGPWTPEEDTKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 370 79********************************************97 PP
4	Myb_DNA-binding	55.1	1.8e-17	376	420	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++teE++ +++++ lG++ W++Ia++++ gRt++++k++w+++ RWR89910.1 376 RGKFSTEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTH 420 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MGRSPSCDEN GLKKGPWTPG EDKRLVQYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF STEEEQTILN LHSILGNKWS AIATHLPGRT DNEIKNFWNT HIKKKLVHMG 120 IDPMTHRPRT DFFTTMPELM ALANLKEVMD NQPWDEHAIR LQEAVQLAKY QYIQYLIQSA 180 VSVTGNSNNT PNSIGDLEGI NLMSSLPSPR ETLVLDPFQL ENATQCSLGV ADAQPLNDQI 240 PAYTPQDLPY PWDFMPPMSN EVQNSSFTQL SQGEYSPISP LPPSPPPAIG ERFINNVADA 300 CSSSSYDGSS PPSPCCDENG MKKGPWTPEE DTKLVQYIQK HGHGSWRALP KLAGLNRCGK 360 SCRLRWTNYL RPDIKRGKFS TEEEQTILNL HSILGNKWSA IASHLPGRTD NEIKNFWNTH 420 IKKKLIHMGI DPNTTARELT SSPPYLN

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MGRSPSCDEN GLKKGPWTPG EDKRLVQYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF STEEEQTILN LHSILGNKWS AIATHLPGRT DNEIKNFWNT HIKKKLVHMG  120
IDPMTHRPRT DFFTTMPELM ALANLKEVMD NQPWDEHAIR LQEAVQLAKY QYIQYLIQSA  180
VSVTGNSNNT PNSIGDLEGI NLMSSLPSPR ETLVLDPFQL ENATQCSLGV ADAQPLNDQI  240
PAYTPQDLPY PWDFMPPMSN EVQNSSFTQL SQGEYSPISP LPPSPPPAIG ERFINNVADA  300
CSSSSYDGSS PPSPCCDENG MKKGPWTPEE DTKLVQYIQK HGHGSWRALP KLAGLNRCGK  360
SCRLRWTNYL RPDIKRGKFS TEEEQTILNL HSILGNKWSA IASHLPGRTD NEIKNFWNTH  420
IKKKLIHMGI DPNTTARELT SSPPYLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-101	MYB family protein