PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89912.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 323aa MW: 36293 Da PI: 6.5099

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.6e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv++++++G g+W++ ++ g++R++k+c++rw +yl RWR89912.1 14 KGPWTPEEDTKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.7	1.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++teE++ +++++ lG++ W++Ia++++ gRt++++k++w+++ RWR89912.1 67 RGKFSTEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MGRSPCCDEN GMKKGPWTPE EDTKLVQYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF STEEEQTILN LHSILGNKWS AIASHLPGRT DNEIKNFWNT HIKKKLIHMG 120 IDPNTHRPRT DFFTTLPELM VIANLKEVMM DNQPWAEHAV RLQEAVQLAK YQYIQYLIQS 180 AVSVASNPDS SSNSTADMDA INVMSSLPLL RENLGLNPSQ IENATQYSLG VDGGRPLNDK 240 LPYTTPPDLE FQALMRNEIN QDSDLASLSQ GEFTPRSPLP PSPPFTIGER SMKNPADACC 300 TSSYDGSSPS FWAELLLDDP FYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	5e-98	MYB family protein