PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89913.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 327aa    MW: 36949.2 Da    PI: 6.7086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv++++++G g+W t ++  g++R++k+c++rw +yl
       RWR89913.1 14 KGPWTPEEDKKLVKYIQKHGHGSWITLPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding59.19.9e-1967110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE++++++++  +G++ W++Iar+++ gRt++++k++w++
       RWR89913.1  67 RGKFSPEEEQIILNLHSIHGNK-WSRIARHLP-GRTDNEIKNFWNT 110
                      89********************.*********.***********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MGRSPCCDEN GLRKGPWTPE EDKKLVKYIQ KHGHGSWITL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEQIILN LHSIHGNKWS RIARHLPGRT DNEIKNFWNT QLKKKLIEMD  120
IDPMTHCPRT DFLLTMAQLI PLANLKELMD REPWEKQAIR LQEVIQSAKF QYIQYLVQSA  180
MAMAGNSNNI ADIVAINLLS SMPSPRGTLL NPSQLENPTQ GSLELLDAQP LNDQIPHYTP  240
SPDLPYPWDF MPPMGNEINQ DSNFTQLSHG DYTPKSPLPP SLPPTLGERS IINPADACSS  300
SSCDGSTPPF WPDLFLDDPL FSQASSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-93MYB family protein