PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89926.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 302aa    MW: 34128.4 Da    PI: 6.2307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l ++++ +G g+Wk+ ++  g++R++k+c++rw +yl
       RWR89926.1 14 KGPWTPEEDKQLSQYIESHGHGSWKALPKLAGLNRCGKSCRLRWSNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.11.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + ++++eE+e ++ ++  lG++ W++Ia +++ gRt++ +k++w++++
       RWR89926.1  67 KEKFSQEEEETILYLHSILGNK-WSAIATHLP-GRTDNAIKNFWNNHM 112
                      679*******************.*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MGRHPCCDVN GLKKGPWTPE EDKQLSQYIE SHGHGSWKAL PKLAGLNRCG KSCRLRWSNY  60
LRPDVKKEKF SQEEEETILY LHSILGNKWS AIATHLPGRT DNAIKNFWNN HMKKKSMHMG  120
LDTMTHRLQP DLFSSLHQLI ALVNVTKSMG VLPLKEHALR LQEAAFLAKY HYIESLLQSA  180
AAMASSSSGS LNSDTTKENL EVNPSQSKNA TKFSHGVASC QPINDQILLN PAQDMQFPTN  240
EFDDDSNFTM LNEEDYTTKS PLAPYQPSLL EENPVRNIDD AFISSSYDGD LQPFWSDLFL  300
ED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.17e-81MYB family protein