PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90001.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 222aa MW: 24554.7 Da PI: 8.983

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	64.4	2.2e-20	34	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde+l +v+q+G+++W++I+r ++ gR++k+c++rw + RWR90001.1 34 KGPWSPEEDEKLTLLVQQHGPRNWSLISRSIP-GRSGKSCRLRWCNQ 79 79****************************.*********985 PP
2	Myb_DNA-binding	53.6	5e-17	88	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ede ++ a++++G++ W+tIa+ + gRt++ +k++w++ RWR90001.1 88 PFSPQEDEAIIAAHAKYGNK-WATIAKLLT-GRTDNAVKNHWNST 130 89****************.****9.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MASDSPSSSS PSPSSSSSSL VEAREISKVV RRIKGPWSPE EDEKLTLLVQ QHGPRNWSLI 60 SRSIPGRSGK SCRLRWCNQL HPDVHHRPFS PQEDEAIIAA HAKYGNKWAT IAKLLTGRTD 120 NAVKNHWNST LKRKLPSHSP LGGGDGDVNK RLRLSHCPLS AFRAFSPDDP PTELTLAPPG 180 EGLLVGERTT EAPTGLWEVM REVVAREVRC YMDFLLHNAT VD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-60	MYB family protein