PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90068.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 398aa MW: 45597.1 Da PI: 6.2994

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.4	2.1e-19	88	135	1	52
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 s+y+GVr+++ +grW+AeI+dp++ r+r++lg+f+taeeAa+a+++ + RWR90068.1 88 SRYRGVRQRP-SGRWAAEIHDPKK---RTRVWLGTFDTAEEAARAYDKKAID 135 79******.7*****965...5*****************99875 PP
2	AP2	57.9	2.5e-18	258	304	3	53
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 y+GVr+++ +grWvAeI++p++ + +++lg+f+t+eeAa+a+++ + ++ RWR90068.1 258 YRGVRRRP-SGRWVAEIHVPKK---KEKVWLGTFDTEEEAARAYDKKAMEF 304 9*****.7*****854...6******************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MESEGRDTRV ALISGLSPEE ENSIILSAYK HVLYKEVVPD LKCSSSSTIP HVAEDPCLTC 60 GGGIEDCLGC NLFTPPDENM KEEKKKRSRY RGVRQRPSGR WAAEIHDPKK RTRVWLGTFD 120 TAEEAARAYD KKAIDFHRDR AKLNFPFSQY DPPPYHTMLE GQQQQQQQQQ PQQHQMMPGT 180 LPLMPWNREA LGEMDFGGSM REALGEEEFQ NWVKISHNEY AIAASSTAPS ATTNCLGCNL 240 FNPPDENKEE GDKKRRNYRG VRRRPSGRWV AEIHVPKKKE KVWLGTFDTE EEAARAYDKK 300 AMEFGRPRSK LNFPFSEYSP NPDHTLLESQ EQKQPPQQQM LPSTLPLMHW NWEDSAEMAF 360 GGNIWEELGR AGISELGENR PQRTCHCSFI QCSFCIDQ

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MESEGRDTRV ALISGLSPEE ENSIILSAYK HVLYKEVVPD LKCSSSSTIP HVAEDPCLTC  60
GGGIEDCLGC NLFTPPDENM KEEKKKRSRY RGVRQRPSGR WAAEIHDPKK RTRVWLGTFD  120
TAEEAARAYD KKAIDFHRDR AKLNFPFSQY DPPPYHTMLE GQQQQQQQQQ PQQHQMMPGT  180
LPLMPWNREA LGEMDFGGSM REALGEEEFQ NWVKISHNEY AIAASSTAPS ATTNCLGCNL  240
FNPPDENKEE GDKKRRNYRG VRRRPSGRWV AEIHVPKKKE KVWLGTFDTE EEAARAYDKK  300
AMEFGRPRSK LNFPFSEYSP NPDHTLLESQ EQKQPPQQQM LPSTLPLMHW NWEDSAEMAF  360
GGNIWEELGR AGISELGENR PQRTCHCSFI QCSFCIDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	253	281	KKRRNYRGVRRRPSGRWVAEIHVPKKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	1e-28	ERF family protein