PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR90093.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family bHLH
Protein Properties Length: 211aa    MW: 23187.9 Da    PI: 10.3715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR90093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08119159954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  RWR90093.1 119 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 159
                 699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MDMMMMMQMD KLPQLSQFPL NNAPPIFESL PVTTPALINP TSSPLPFICN TTQDPAMPVI  60
LRGASSSSSS ANKGSSVEAM REMIFRIAAM QPIHIDPESV KPPKRRNVKI SKDPQSVAAR  120
HRRERISEKI RILQRLVPGG TKMDTASMLD EAIHYVKFLK TQVQSLERAA ANTSNAFGLP  180
SAVSGIGYPS SLIGKHYHQS SEIFSPTQLL S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-48bHLH family protein