PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR90206.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 322aa    MW: 36546.7 Da    PI: 10.6536
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR90206.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
       RWR90206.1 18 RGHWRPAEDEKLRQLVEQHGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                     899*****************************.***********996 PP
2Myb_DNA-binding56.66e-1870113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
       RWR90206.1  70 RRPFTPEEEERLLGAHRVHGNK-WALIARLFP-GRTDNAVKNHWHV 113
                      679*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MIMEDSKSSA DEAKTCPRGH WRPAEDEKLR QLVEQHGPQN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINR RPFTPEEEER LLGAHRVHGN KWALIARLFP GRTDNAVKNH WHVIMARRHR  120
ERSRLIGKRS SQHHLGTNIN GLFSRSSVHQ DKNGLKQLHF GTSKIFEFQS HAKDGVFSIS  180
PSSSLSSWAF GGSTSSTKTP SWDVFGEGRS DRFTPNSNYS VLESSHSSDQ SLRRYYNSSM  240
HGGFRNLGAQ GLTIYNRGFS NPVDFSNRSD GCANEPMFKV RLGENPATFL KTRVNNQKQF  300
GDDQTSKQKD VPFIDFLGVG LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-66MYB family protein