PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR90329.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MIKC_MADS
Protein Properties Length: 144aa    MW: 16350.2 Da    PI: 9.2239
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR90329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65.3e-26958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien   rqvtf+kRr+g+lKKA+ELSvLCda++ ++ifs++gklye +
  RWR90329.1  9 KRIENAVHRQVTFCKRRAGLLKKAKELSVLCDADIGIMIFSTHGKLYELA 58
                79*********************************************965 PP
2K-box25.27.1e-10921431970
       K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                 +e+  Lk+eie Lq+ +  + G    +++l eL  Le++Le  + +iR+ K+
  RWR90329.1  92 KESLMLKQEIELLQKGLSYMHGGRTATMTLDELDALERHLEIWMCHIRTAKY 143
                 78899*******************************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MARGKIQMKR IENAVHRQVT FCKRRAGLLK KAKELSVLCD ADIGIMIFST HGKLYELATK  60
GTMEGLIERY MKKSGAAETE VGEGNPPPEP RKESLMLKQE IELLQKGLSY MHGGRTATMT  120
LDELDALERH LEIWMCHIRT AKYC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-56MIKC_MADS family protein