PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR90334.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25440.7 Da    PI: 9.4631
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR90334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.46.8e-32959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+lyeys+
  RWR90334.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLYEYSN 59
                79***********************************************95 PP
2K-box116.23.1e-38761733100
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +s+++s +ea+++++qqe+akL+++i+ Lq+ +Rhl+G++L+sLs+keL+qLe++Le+++++iRskK+ell+ +ie++qk+e elq++n++Lr+k++e
  RWR90334.1  76 SSDSTSITEANSQYYQQESAKLRQQIQILQNANRHLMGDSLSSLSIKELKQLENRLERGITRIRSKKHELLFGEIEYMQKREVELQNDNMYLRAKVAE 173
                 55667799***************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLYEYSNS  60
NIRATIDRYK KASADSSDST SITEANSQYY QQESAKLRQQ IQILQNANRH LMGDSLSSLS  120
IKELKQLENR LERGITRIRS KKHELLFGEI EYMQKREVEL QNDNMYLRAK VAENERAQQA  180
NMLSAPEFDT LPQFDSRNYF NLLEAAPPFS HQDQTALHLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-101MIKC_MADS family protein