PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR90341.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family FAR1
Protein Properties Length: 686aa    MW: 78568.7 Da    PI: 8.6512
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR90341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.53.5e-2681173290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +Y++YA+++GF+vr++++++skr+ge+++r fvCs++g+r+e++++ ++k + ++++ ++gC+a l+vk+++   ++ we+t+++++HnH+l+
  RWR90341.1  81 WYKDYARRIGFKVRIDRQERSKRDGEVISRLFVCSRKGTRREKSNNrESKCKAEQTHAKVGCQAYLMVKRRRgpvEDSWEITRFQEHHNHDLV 173
                 7*****************************************9999344556689999*************99999***************97 PP
2FAR178.51.2e-24219309288
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                 +Yn+YA+++GF+vr++++++skr++e+++r fvCsk+g+r+++ ++ + ++r ++ +tr+gC+a l+vk+++    + wevt++++ HnH+
  RWR90341.1 219 WYNHYARRMGFRVRIDRQERSKRDKEVISRLFVCSKKGTRRKKYNNrDGRSRAEQGHTRVGCQAYLMVKRRRgatGESWEVTRFQELHNHD 309
                 6****************************************999885667788999***************9888899************7 PP
3FAR184.12.2e-26360452290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +Yn+YA++vGFsvr++++++skr+ge+++r fvCsk+g+r+e+ ++ +++++ ++++tr+gC+a l+vk+++   +++w+vt+++  H H+l+
  RWR90341.1 360 WYNDYARRVGFSVRIDRQERSKRDGEVISRLFVCSKQGRRREKYTNkESTTKGEQPHTRVGCQAYLMVKRRRgsvEDNWVVTRFQDVHKHDLV 452
                 7****************************************99988344556699***************999999***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MGSNNDNDAS VSCKITEGHA TESGVAINVE PDTVVEYMNS DNNIIGEYEV VIDADQCPRP  60
EDNSIPCLGM RFKTADDAYT WYKDYARRIG FKVRIDRQER SKRDGEVISR LFVCSRKGTR  120
REKSNNRESK CKAEQTHAKV GCQAYLMVKR RRGPVEDSWE ITRFQEHHNH DLVSPSSMVS  180
KRKISKRKMA LDEPCPISEQ NSCPHLGMQF RTADEAYIWY NHYARRMGFR VRIDRQERSK  240
RDKEVISRLF VCSKKGTRRK KYNNRDGRSR AEQGHTRVGC QAYLMVKRRR GATGESWEVT  300
RFQELHNHDS ASLSNKRMGP KNKNGKFKVA LDIESGTNSE DDSCPRLGLQ FKTADDAYQW  360
YNDYARRVGF SVRIDRQERS KRDGEVISRL FVCSKQGRRR EKYTNKESTT KGEQPHTRVG  420
CQAYLMVKRR RGSVEDNWVV TRFQDVHKHD LVSPSKVSSL RSHKRIRHTS EKYAENLSGA  480
CVDGNGIFSS LVDGADGIEN VGYIQQNLFD HQTFEIQDTF ANEDPNIAQE MQKNNSQCNV  540
INGLLFNQGL MSGAEKQRKG TKSCSICKGH DHNKRKCPTL KGIGHSQQPE SDAHLHLSDS  600
HLQIGDSDLH MDDSHPHMID THHPHLSDSQ EHMSDSHPGF CALSLWNDKH TSDVMSNQAV  660
KQLFGWVVTD DGEDFRVCSE LLPTEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181189KRKISKRKM
2182190KRKISKRKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-33FAR1 family protein