PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR90387.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 329aa    MW: 36254.1 Da    PI: 7.7924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR90387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-111863447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     W+ eE + +  av+ +  +   +W++Ia+ ++ gRt  ++k+++q++
       RWR90387.1 18 WSWEENKAFEVAVAIHAEDrsdRWERIAAAVP-GRTIAEIKHHYQSL 63
                     *****************99*************.************86 PP
2Myb_DNA-binding41.82.5e-13115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r++   Rt+ q+ s+ qky
       RWR90387.1 115 AWTEDEHRLFLLGLSKYGKGDWRSISRKFVVSRTPAQVASHAQKY 159
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MKQQGQMTTN EKSKGTLWSW EENKAFEVAV AIHAEDRSDR WERIAAAVPG RTIAEIKHHY  60
QSLVEDIRAI EGGIDPLPPY LPRKCAAHTG RYQGISNHGG KGSSRSNQER RKGIAWTEDE  120
HRLFLLGLSK YGKGDWRSIS RKFVVSRTPA QVASHAQKYF IRLESNKRRR SSIHDITNVG  180
NEDISAHQES IIDQSNGHIG ATGESIKQSR QPPSSTSGGS TNSNKRWRSS IYDITGVGNG  240
EILVPQAPIT SQPNGPTGEH SSPPPSSTFE VYGPLTIGQP IGESLVSVTG TPVPAPPDMA  300
YDAYRWDHCS WCPNEHSSND ISNAHITED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-73MYB family protein