PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90501.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 507aa MW: 56132.3 Da PI: 6.6242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6e-05	400	434	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +++ L++++ + +K + a++L++A+ YIk Lq RWR90501.1 400 LADRITALQQIVSPF-----GKTDTASVLQEAIGYIKFLQ 434 668999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MAEIGSEGSL AISSSTPNWW NNLHANPHSS LINMNPWHPQ NSTSNSTCED MSISNSFTNA 60 SNHSCLSVEN APRELIESTS SVTELSGESA SENHLWSQIL LSVETNGDMH NSHGGGENFL 120 DSLSSKALTT EMFEPASDFL KKLDNSWEFQ NSMPFNGIEK QLNSYDRSLI GHERSTNTSD 180 LVSKWSIAPP DPQQDRRTAP TTCNISMNSF MDRYSDSFLS QMRQDPPDSS SFSSNEGLGN 240 GNLGHLSSYG HELKRDNQIH GMEASEAQFL RSFSGNGMRF QMGLKNSMIG DSKKCHYGIS 300 DVPCSNNARA FSDLISFSGN LNKPLVDFPE SKPCPRSSNS PDMKKQGHET CSLTRGNGRE 360 IASGGKKKRS EENSETIFKK PKQEGSTTSS PKIQVPKVKL ADRITALQQI VSPFGKTDTA 420 SVLQEAIGYI KFLQEQVQLL SNPYMKSGTN KDHMLWGALE RKDKSETKPD LKSRGLCLIP 480 ISCTPQVYRD NTGPDYWTPT YRGCLYR

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MAEIGSEGSL AISSSTPNWW NNLHANPHSS LINMNPWHPQ NSTSNSTCED MSISNSFTNA  60
SNHSCLSVEN APRELIESTS SVTELSGESA SENHLWSQIL LSVETNGDMH NSHGGGENFL  120
DSLSSKALTT EMFEPASDFL KKLDNSWEFQ NSMPFNGIEK QLNSYDRSLI GHERSTNTSD  180
LVSKWSIAPP DPQQDRRTAP TTCNISMNSF MDRYSDSFLS QMRQDPPDSS SFSSNEGLGN  240
GNLGHLSSYG HELKRDNQIH GMEASEAQFL RSFSGNGMRF QMGLKNSMIG DSKKCHYGIS  300
DVPCSNNARA FSDLISFSGN LNKPLVDFPE SKPCPRSSNS PDMKKQGHET CSLTRGNGRE  360
IASGGKKKRS EENSETIFKK PKQEGSTTSS PKIQVPKVKL ADRITALQQI VSPFGKTDTA  420
SVLQEAIGYI KFLQEQVQLL SNPYMKSGTN KDHMLWGALE RKDKSETKPD LKSRGLCLIP  480
ISCTPQVYRD NTGPDYWTPT YRGCLYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-60	bHLH family protein