PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90526.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 506aa MW: 55922.3 Da PI: 7.9565

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ RWR90526.1 62 RERWTEEEHKKFLEALKLHGRA-WRRIEEHIG-TKTAVQIRSHAQKF 106 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MDVQEKGGGT VFNSGHVLMP SNCIRLDNGN SLLTGVQPKE LYTLGDEVTP KARKPYTITK 60 QRERWTEEEH KKFLEALKLH GRAWRRIEEH IGTKTAVQIR SHAQKFFSKV VRESSCNSSS 120 MKSIEIPPPR PKRKPMHPYP RKLANSSIKG MPLSLQPERS TSPIQSISEQ VNGSPKSVLS 180 AGSDPMGLTI LNPSNGSSPF SSATGLNPRS VLGGEHENGS PSTTTSSVEK DRRSPSPVLV 240 SADSSQQDKP SMDLETDYED QDRSKEASYI EVPTSLKLFG RTVLVTDSHR PSSPIVVQHR 300 EPSIITDTEN QRENLGVLKQ AQTSLTNTMQ RYTTGGQCRS GWNSWPYGVS PLYYCMQFRQ 360 EDSNSAEASS NIPWWAVYGS LPFPPMNSQN VDSKQKPSDS CTQALDDKES SNKEESWTGS 420 NTGSFSEVGL GDRNCEVVDS QNDAKAKEPV SVFRLKASEN SAFSRAGSRD CGKGFVPYKR 480 CVAETDVEQP LIGGDERENQ RIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MDVQEKGGGT VFNSGHVLMP SNCIRLDNGN SLLTGVQPKE LYTLGDEVTP KARKPYTITK  60
QRERWTEEEH KKFLEALKLH GRAWRRIEEH IGTKTAVQIR SHAQKFFSKV VRESSCNSSS  120
MKSIEIPPPR PKRKPMHPYP RKLANSSIKG MPLSLQPERS TSPIQSISEQ VNGSPKSVLS  180
AGSDPMGLTI LNPSNGSSPF SSATGLNPRS VLGGEHENGS PSTTTSSVEK DRRSPSPVLV  240
SADSSQQDKP SMDLETDYED QDRSKEASYI EVPTSLKLFG RTVLVTDSHR PSSPIVVQHR  300
EPSIITDTEN QRENLGVLKQ AQTSLTNTMQ RYTTGGQCRS GWNSWPYGVS PLYYCMQFRQ  360
EDSNSAEASS NIPWWAVYGS LPFPPMNSQN VDSKQKPSDS CTQALDDKES SNKEESWTGS  420
NTGSFSEVGL GDRNCEVVDS QNDAKAKEPV SVFRLKASEN SAFSRAGSRD CGKGFVPYKR  480
CVAETDVEQP LIGGDERENQ RIRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	8e-42	MYB_related family protein