PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90918.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 429aa MW: 48882.3 Da PI: 6.8401

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.7e-19	72	119	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl RWR90918.1 72 RGPWTPEEDQKLIDYIQKHGDGSWRTLPKNAGLSRCGKSCRLRWTNYL 119 89********************************************97 PP
2	Myb_DNA-binding	53.9	4.1e-17	125	169	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia +++ gRt++++k++w+++ RWR90918.1 125 RGRFSFEEEETIIQLHSILGNK-WSAIATRLP-GRTDNEIKNYWNTH 169 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MFSLKSLHIP SRETFLPEKQ LFLLFLTFIL FFHLLGSFQS ETLYISLSLS NIERVFEIMG 60 RVPCCDKNGL KRGPWTPEED QKLIDYIQKH GDGSWRTLPK NAGLSRCGKS CRLRWTNYLR 120 PDIKRGRFSF EEEETIIQLH SILGNKWSAI ATRLPGRTDN EIKNYWNTHI RKRLLRMGID 180 PVTHSPRLDL LDISSILSSS LYNPAQLSLT KLLGMEPFFN SEALRLATSI LSSQHESQML 240 RPQVLQENQF SNSQVQHPLP SFQTQQLQTP IQDIPSCSTS NGQFLTGAHL MPIIKEQFPS 300 GFSDLSYQNT QSTLWKGNLM PSNLDQRFPT LENCDYYNSN QSSMNPLSEH LNYQPNSSNF 360 NFCSVLSTPA SSPVTLNMSS TYINSSTSPT PLNSSSTYLN NSTEDESDSY CSNLLKFEIP 420 QLPDVSEFM

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MFSLKSLHIP SRETFLPEKQ LFLLFLTFIL FFHLLGSFQS ETLYISLSLS NIERVFEIMG  60
RVPCCDKNGL KRGPWTPEED QKLIDYIQKH GDGSWRTLPK NAGLSRCGKS CRLRWTNYLR  120
PDIKRGRFSF EEEETIIQLH SILGNKWSAI ATRLPGRTDN EIKNYWNTHI RKRLLRMGID  180
PVTHSPRLDL LDISSILSSS LYNPAQLSLT KLLGMEPFFN SEALRLATSI LSSQHESQML  240
RPQVLQENQF SNSQVQHPLP SFQTQQLQTP IQDIPSCSTS NGQFLTGAHL MPIIKEQFPS  300
GFSDLSYQNT QSTLWKGNLM PSNLDQRFPT LENCDYYNSN QSSMNPLSEH LNYQPNSSNF  360
NFCSVLSTPA SSPVTLNMSS TYINSSTSPT PLNSSSTYLN NSTEDESDSY CSNLLKFEIP  420
QLPDVSEFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	3e-97	MYB family protein