PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90966.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 458aa MW: 50812.2 Da PI: 6.093

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.5e-05	350	387	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +L++l+ + +K + a++L +A+eYIk L RWR90966.1 350 RKEKLGDRITTLQQLVSPF-----GKTDTASVLFEAIEYIKFL 387 67788899******998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MADEFHTGSS GGNWWGASRT RFSGSSSACS TALSDVGSFG WSETAEMKLR SCEESTSVSS 60 NSIRFQDTHK AQAADSTSCS GVLMDSTAQM TGFNHPVPST VDWSQALLRR SARAESSFHA 120 MLHDDLNSRV DYHDDTGSEQ HLISSDDAAA ICQGSPSNSF SLDSSSYRCP SMVLQGLTDR 180 NPQLECSPFY GRVMNYPTPL NRHVNSNEFS SSSSWSKFPQ FIKNSPPKQQ QPNQLHFSNN 240 TPFWNATAEP INDVKPNFCP SSQNQFLAPT FSEKPNCSYF GPKTVEEIRD SSSTLKKSSS 300 EPPYKRTRNE TTPQLPTFKV PRGFELSFNE IVSCAFLDMD ENSLLYLKVR KEKLGDRITT 360 LQQLVSPFGK TDTASVLFEA IEYIKFLHEQ VSVLSTPYMK TTLHTEPQQN SDKSKEAEGS 420 KQDLRSHGLC LVPVSVIIPV ASETANEFWT PTYGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MADEFHTGSS GGNWWGASRT RFSGSSSACS TALSDVGSFG WSETAEMKLR SCEESTSVSS  60
NSIRFQDTHK AQAADSTSCS GVLMDSTAQM TGFNHPVPST VDWSQALLRR SARAESSFHA  120
MLHDDLNSRV DYHDDTGSEQ HLISSDDAAA ICQGSPSNSF SLDSSSYRCP SMVLQGLTDR  180
NPQLECSPFY GRVMNYPTPL NRHVNSNEFS SSSSWSKFPQ FIKNSPPKQQ QPNQLHFSNN  240
TPFWNATAEP INDVKPNFCP SSQNQFLAPT FSEKPNCSYF GPKTVEEIRD SSSTLKKSSS  300
EPPYKRTRNE TTPQLPTFKV PRGFELSFNE IVSCAFLDMD ENSLLYLKVR KEKLGDRITT  360
LQQLVSPFGK TDTASVLFEA IEYIKFLHEQ VSVLSTPYMK TTLHTEPQQN SDKSKEAEGS  420
KQDLRSHGLC LVPVSVIIPV ASETANEFWT PTYGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-46	bHLH family protein