PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR91412.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family AP2
Protein Properties Length: 471aa    MW: 50914.1 Da    PI: 7.5526
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR91412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.3e-12130186155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  RWR91412.1 130 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 186
                 57*******************5444.2455536655.779999**************98 PP
2AP247.44.7e-15229280155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  RWR91412.1 229 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 280
                 57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MDSSQQSWLS FSLSNQPTND SSNLCLFEAF TSNHGTVERL ENDSGGDGGL SMLCMGPKLE  60
DFLGGGNATV GRFGVAATES DAGGIYDDSE LKTIAAGFLR GLTADGVKGA VVAEAAGGKK  120
GADSFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQGGYDKE EKAARAYDLA  180
ALKYWGPTTT TNFPISNYEK ELEEMKDMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH  240
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIASS  300
NLPIGGISGK SRPSDSSSSD NKSSESKQTD LSMASQPSTL TFSQPIKSDP QDYWSLLALQ  360
NPSQSHAKNK PTLIQSSPNS SNLHCLSNYN NNVDFSTCPT INQGNGSFLN GGIFQQQNPC  420
VTVAAPGPAT TVAESGYDSS SYGTWATTSI HSFQPAKPSL TVLQTPIFGM E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-135AP2 family protein