PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91582.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

E2F/DP

Protein Properties

Length: 474aa MW: 52999.4 Da PI: 10.0885

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	85.7	3.5e-27	226	307	3	71
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg RWR91582.1 226 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnrvespdrqqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 307 689*****...*999***************************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MEGHSDVREK EEEERKRRKR ERAGDGRPQR RARERGGREK GREMEVHSDV REKEEEERKG 60 GRWKATATCA RKRERGGRER ERGGREKGRE GKTGLGDRER VRNFMPKTTI SCFLNSTASP 120 GMGSRGNCQE DGKKKKKKMP SFSKAASTRS WGTSTNSGQS LSTGASGSAG SPSIRSELAT 180 ATPAATESAF VRLNQQLDDA LGDDDDTAGG RKKKRAARAV GGDKGGRGLR QFSMKVCEKV 240 ESKGRTTYNE VADELVAEFA DPSNRVESPD RQQFDEKNIR RRVYDALNVL MAMDIISKDK 300 KEIQWKGLPR TSLNDIEELK SECVGLRHRL EKKAAYLQEL EDQFVGLQNL VQRNEQLYGS 360 GNAPSGGVAL PFILVQTRPH ATVEVEISED MQLVHFDFNS TPFELHDDAY VLKSMRLCGR 420 QNKEGIHDPI VERGESSSML SVYQHHIPRA SAIRGQPASP PIPGILKARI KHEQ

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MEGHSDVREK EEEERKRRKR ERAGDGRPQR RARERGGREK GREMEVHSDV REKEEEERKG  60
GRWKATATCA RKRERGGRER ERGGREKGRE GKTGLGDRER VRNFMPKTTI SCFLNSTASP  120
GMGSRGNCQE DGKKKKKKMP SFSKAASTRS WGTSTNSGQS LSTGASGSAG SPSIRSELAT  180
ATPAATESAF VRLNQQLDDA LGDDDDTAGG RKKKRAARAV GGDKGGRGLR QFSMKVCEKV  240
ESKGRTTYNE VADELVAEFA DPSNRVESPD RQQFDEKNIR RRVYDALNVL MAMDIISKDK  300
KEIQWKGLPR TSLNDIEELK SECVGLRHRL EKKAAYLQEL EDQFVGLQNL VQRNEQLYGS  360
GNAPSGGVAL PFILVQTRPH ATVEVEISED MQLVHFDFNS TPFELHDDAY VLKSMRLCGR  420
QNKEGIHDPI VERGESSSML SVYQHHIPRA SAIRGQPASP PIPGILKARI KHEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	ARKRERG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-118	E2F/DP family protein