PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91621.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 622aa MW: 69500.8 Da PI: 7.6235

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.4e-09	494	541	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+++v q+G g+W+ I r + +Rt ++k++w+++l RWR91621.1 494 WTLAEVMKLIEGVSQHGVGRWTDIKRLLFsssGHRTSVDLKDKWRNLL 541 **************************99999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MEMLENEQYN CKFGALNNTL EESVSVSSES FADQLAYKLA GVDRDGTIIP SLAEELMEVD 60 HFLSEPKLDN IVEDNVLGLE LANQEKCLKI GDFSCPDDLR QLNKGTMSSD AKQEAEKESK 120 FEFLDGMLQG VDEEGNLHVT NDLSNDCADY LLDAGFAEKH SHLDYGHCEG DNLRNLCSEG 180 FSPGLSEREM SPAGMRSLST AAVPLPESNF GQSTFLLDNM SIRELHEAFR STFGRETSVK 240 DKQWLKRRIL FGLQNLIEVE NGSSLLVSGL SSHQNEADLI MSSGNDSSGS SIHQNFTNTH 300 GDRTPLLGRG MGTNGHATSD VMVSVSGAEK IGFGRPSLEE RESALLNRKR LRRPTRRYIE 360 ESDVTSRTCN GKFETSTANM TQNCSRARSH NRYHQKEFET STLVSRQLSV GGSGLQVSSG 420 CRVRRGRPRK NSTSLMGHDY NDYKEEHRML SVQSKKYCGL GSSHSESHDD MSDDCATPIR 480 TGKSGIRRKH HRLWTLAEVM KLIEGVSQHG VGRWTDIKRL LFSSSGHRTS VDLKDKWRNL 540 LRASCVQMQN KKEVERRRKH ASLPIPPTVL RRVRELAVIY PYPRERKPRP PPAAVATTPV 600 TGTGSDTSMS RSGRILHRRN FA

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MEMLENEQYN CKFGALNNTL EESVSVSSES FADQLAYKLA GVDRDGTIIP SLAEELMEVD  60
HFLSEPKLDN IVEDNVLGLE LANQEKCLKI GDFSCPDDLR QLNKGTMSSD AKQEAEKESK  120
FEFLDGMLQG VDEEGNLHVT NDLSNDCADY LLDAGFAEKH SHLDYGHCEG DNLRNLCSEG  180
FSPGLSEREM SPAGMRSLST AAVPLPESNF GQSTFLLDNM SIRELHEAFR STFGRETSVK  240
DKQWLKRRIL FGLQNLIEVE NGSSLLVSGL SSHQNEADLI MSSGNDSSGS SIHQNFTNTH  300
GDRTPLLGRG MGTNGHATSD VMVSVSGAEK IGFGRPSLEE RESALLNRKR LRRPTRRYIE  360
ESDVTSRTCN GKFETSTANM TQNCSRARSH NRYHQKEFET STLVSRQLSV GGSGLQVSSG  420
CRVRRGRPRK NSTSLMGHDY NDYKEEHRML SVQSKKYCGL GSSHSESHDD MSDDCATPIR  480
TGKSGIRRKH HRLWTLAEVM KLIEGVSQHG VGRWTDIKRL LFSSSGHRTS VDLKDKWRNL  540
LRASCVQMQN KKEVERRRKH ASLPIPPTVL RRVRELAVIY PYPRERKPRP PPAAVATTPV  600
TGTGSDTSMS RSGRILHRRN FA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	424	430	RRGRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	4e-29	MYB_related family protein