PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR91662.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 234aa    MW: 25659.8 Da    PI: 6.3324
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR91662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.94.1e-3971071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++l+qq+ +l+a+la+lk
  RWR91662.1   7 PCGACKFLRRKCVKGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRLEAAVTISYEAQARLQDPIYGCVSHIFALRQQVVNLQAQLASLK 105
                 7*************************89********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  RWR91662.1 106 AQ 107
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MTGFGSPCGA CKFLRRKCVK GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVSD  60
RLEAAVTISY EAQARLQDPI YGCVSHIFAL RQQVVNLQAQ LASLKAQAAQ NLAANGSMSS  120
SPPQDKFHDR LPSFQQECNG FFNLESLVPG QASFSGNPES IESMLCYGNG LIDPNSAGEY  180
HHSSMTEERT SYEGSGSSLY PMATLDMQMD SRKWDFQDME DLQSVAFANY LHHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-58LBD family protein