PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91693.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 1120aa MW: 125731 Da PI: 4.7022

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l RWR91693.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.6	1.9e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l RWR91693.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1120 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEANDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFFDVADEE RPVEQPKFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSSILQA NKLNDPQAVR KRTKLMLPAP 300 QISDHELEEI AKMGYASDLV SGNEEPAEGS GATRALLSNY AQTPRQGMTP LRTPQRTPGG 360 KADAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MATPLASPGP 420 MSLTPRIGMT PSRDGYSFGM TPRGTPIRDE LHINEDMDMH DSAKLELRRQ AELKRQLRSG 480 LTTLPQPKNE YQIAIQPIPE ENEEVEENIE EDMSDRMARE RAEEAARQEA LLRKRSKVLQ 540 RELPRPPAAS VELIRNSLVR SDEDKSSFVP PTPIELADEM IRKELLTLLE HDNAKYPLDN 600 KVDKEKKKGA KRTPNGKLVV PEIDDFDEDV LKEADSLIKE EVQFLRVAMG HEDESLDEFI 660 KARDACQEDL MYFPTRNAYG LASVANNSDK LAALQNEFEN VKKKMDDEAK KAQRLEQKIK 720 LLTHGYQLRA GKLWTQIEAT FKQMDTAGTE LECFQALQKQ EKLAASYRIS SLYEEVNKQK 780 ELERSLQYRY GNRLVEQERI QILLDEYKLE LQKQEEIAAK NRELEALVQS TEENGPITSS 840 EELPISFPTN QQKEETLTQE LDLSQDEAAH NADIHPTNMN VDQDQNSVVN MDICSSNTTG 900 AAVEEKVAQV DGHLHVELKV SVTDTNSSDV SSSENLSIIP SQAADVDTGA AISNFVSTEE 960 KMMVDLVHHP AAVDSGNGVE VATEDKAQEM AVESRNEPPS DSGNVAEAAE DKPCDSEVQV 1020 EGEPTVVISD DFVEAKSQVE YHGAVTVGQS SDDNPIERDD GIDDGNNNLV ATAKEGFKIT 1080 DDLVDQTQMT AGNTSVNDDG TVQMGDGYSI GVAASVEQPQ

Sequence ? help Back to Top

Protein Sequence Length: 1120 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEANDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFFDVADEE RPVEQPKFPT  240
TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSSILQA NKLNDPQAVR KRTKLMLPAP  300
QISDHELEEI AKMGYASDLV SGNEEPAEGS GATRALLSNY AQTPRQGMTP LRTPQRTPGG  360
KADAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MATPLASPGP  420
MSLTPRIGMT PSRDGYSFGM TPRGTPIRDE LHINEDMDMH DSAKLELRRQ AELKRQLRSG  480
LTTLPQPKNE YQIAIQPIPE ENEEVEENIE EDMSDRMARE RAEEAARQEA LLRKRSKVLQ  540
RELPRPPAAS VELIRNSLVR SDEDKSSFVP PTPIELADEM IRKELLTLLE HDNAKYPLDN  600
KVDKEKKKGA KRTPNGKLVV PEIDDFDEDV LKEADSLIKE EVQFLRVAMG HEDESLDEFI  660
KARDACQEDL MYFPTRNAYG LASVANNSDK LAALQNEFEN VKKKMDDEAK KAQRLEQKIK  720
LLTHGYQLRA GKLWTQIEAT FKQMDTAGTE LECFQALQKQ EKLAASYRIS SLYEEVNKQK  780
ELERSLQYRY GNRLVEQERI QILLDEYKLE LQKQEEIAAK NRELEALVQS TEENGPITSS  840
EELPISFPTN QQKEETLTQE LDLSQDEAAH NADIHPTNMN VDQDQNSVVN MDICSSNTTG  900
AAVEEKVAQV DGHLHVELKV SVTDTNSSDV SSSENLSIIP SQAADVDTGA AISNFVSTEE  960
KMMVDLVHHP AAVDSGNGVE VATEDKAQEM AVESRNEPPS DSGNVAEAAE DKPCDSEVQV  1020
EGEPTVVISD DFVEAKSQVE YHGAVTVGQS SDDNPIERDD GIDDGNNNLV ATAKEGFKIT  1080
DDLVDQTQMT AGNTSVNDDG TVQMGDGYSI GVAASVEQPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDTRQRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein