PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91911.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 211aa MW: 24395.9 Da PI: 10.2977

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.1	4.7e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRr gilKKA+E+ +LCdaev++++fsstgk+ eyss RWR91911.1 9 KRIENSTNRQVTYSKRRGGILKKAKEITILCDAEVSLVVFSSTGKMSEYSS 59 79***********************************************96 PP
2	K-box	81.9	1.5e-27	71	165	1	95
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk+sgk+l++ak+e l++e++++kke++++q ++Rhl+GedL+sL keL +e++L+++l ++R++++e+l++ ++ ++ e+e+++ L+ RWR91911.1 71 YQKASGKKLWDAKHEFLSNEVERIKKENDSMQIKLRHLKGEDLTSLHPKELIPIEEALDNGLANVRARQMEFLRTLKKNERNLEDENKRLSYILH 165 899*********************************************************************97655555555555555555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MGRGKIEIKR IENSTNRQVT YSKRRGGILK KAKEITILCD AEVSLVVFSS TGKMSEYSSP 60 STTLVKILDR YQKASGKKLW DAKHEFLSNE VERIKKENDS MQIKLRHLKG EDLTSLHPKE 120 LIPIEEALDN GLANVRARQM EFLRTLKKNE RNLEDENKRL SYILHQQQIS MGGNVREADH 180 HGYLQKGRDY PSQIPFAFRV QPIQPNLHQN K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-83	MIKC_MADS family protein