PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR91988.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22137.8 Da    PI: 10.0172
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR91988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52.1e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifsstgkl+e+ss
  RWR91988.1  9 KRIENATSRQVTFSKRRVGLLKKAQELSVLCDAEVALIIFSSTGKLFEFSS 59
                79***********************************************96 PP
2K-box70.45.7e-248717215100
       K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ++  +e++ Lk+ei +Lq  + +++G++L+ LslkeLq+Le+qL +++ +++++K++llleq+e+++ +e+++  en++Lrk+++e
  RWR91988.1  87 KRQAKEVNILKDEITKLQIAHLQMMGKELTGLSLKELQHLEHQLTEGILSVKDRKEQLLLEQLEKSRVQERRTIVENESLRKQVDE 172
                 56679******************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MGRGKIEIKR IENATSRQVT FSKRRVGLLK KAQELSVLCD AEVALIIFSS TGKLFEFSSA  60
GMKRTLSRYS KCVDGFEPSL VKYEVEKRQA KEVNILKDEI TKLQIAHLQM MGKELTGLSL  120
KELQHLEHQL TEGILSVKDR KEQLLLEQLE KSRVQERRTI VENESLRKQV DELRGILPST  180
EQPMPPYVRI STL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-67MIKC_MADS family protein