PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92196.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 213aa MW: 23293.6 Da PI: 8.7261

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.2	4.9e-42	40	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqq++++l+ael+++++ RWR92196.1 40 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQEVQSLQAELNAVRA 138 7***********************************************************************************************998 PP DUF260 100 e 100 e RWR92196.1 139 E 139 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MSRDRERLDE VGKKLKTDAS DRMGRRHLLG LPGTLNTITP CAACKLLRRR CAQECPFSPY 60 FSPHEPQKFA SVHKVFGASN VSKMLLEVPE SQRADAANSL VYEANVRLRD PVYGCMGAIS 120 TLQQEVQSLQ AELNAVRAEI LKYKYRDTSA NIIPSHHPIL LVSGVVSVAV PPPVPPSPPP 180 PPAASSSSSM FTPRSIDNTD YSSISNENVS FFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-80	LBD family protein