PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR92674.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25668.3 Da    PI: 9.764
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR92674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.2e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELS+LCdae+a+i+fss+g+lyeys+
  RWR92674.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEIALIVFSSRGRLYEYSN 59
                79***********************************************95 PP
2K-box118.84.7e-39761734100
       K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ss+++  +ea+a+++qqe+akL+++i+ Lq+++Rhl+G+ L+sLs+keL+qLe++Le++l++iRskK+ell+++ie++qk+e elq++n++Lr+k++e
  RWR92674.1  76 SSNTNvSTEANAQYYQQEAAKLRQQIQILQNSIRHLMGDALSSLSIKELKQLENRLERGLTRIRSKKHELLFAEIEYMQKREVELQNNNMYLRAKIAE 173
                 445555899**************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCD AEIALIVFSS RGRLYEYSNN  60
NIKATIERYK KACTNSSNTN VSTEANAQYY QQEAAKLRQQ IQILQNSIRH LMGDALSSLS  120
IKELKQLENR LERGLTRIRS KKHELLFAEI EYMQKREVEL QNNNMYLRAK IAEVEQAQQT  180
HLLPAPEFGA LPAFDSRNFF GGVNILEEAS HYSKQDQTAL HLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.12e-99MIKC_MADS family protein