PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR92676.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25056.1 Da    PI: 7.0216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR92676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.7e-23958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien   +qv+f+kRr g+lKKA+ELS+LCda++ +iifs++gkl+e +
  RWR92676.1  9 KRIENPVHQQVSFCKRRGGLLKKAKELSILCDADIGMIIFSKHGKLHELA 58
                79*********************************************965 PP
2K-box44.85.5e-16821691097
       K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 e++k+ +l+qe++ Lk+ei++Lq   R + G+  e+ +l eL+ +e+ Le+ ++ +R+ K++ ++++i+ l++k ++l+ +n+ L+ k
  RWR92676.1  82 EAHKSLELKQEVDVLKQEIQMLQMGFRCMFGNRSEKETLDELHGMERYLENRIRLVRTEKMQNMFQEIQLLRNKDEMLEAANEFLQGK 169
                 45566789****************************************************************************9977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MVRGKRQMKR IENPVHQQVS FCKRRGGLLK KAKELSILCD ADIGMIIFSK HGKLHELATK  60
GTMQGMIERY KETWCAAEAE EEAHKSLELK QEVDVLKQEI QMLQMGFRCM FGNRSEKETL  120
DELHGMERYL ENRIRLVRTE KMQNMFQEIQ LLRNKDEMLE AANEFLQGKA LEQNLIFNMP  180
PATAGNGFFD GTPVLTGPPS PLIIQNEVFQ ILEALNCA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-51MIKC_MADS family protein