PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR92750.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 438aa    MW: 50598 Da    PI: 9.4508
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR92750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-151151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i n+s r+ t+ kR++g++KK  ELS+LCd++++ +i+++ 
  RWR92750.1 11 IANDSSRKATYKKRKKGLIKKVCELSTLCDVNACAVIYGPG 51
                89************************************985 PP
2SRF-TF48.79.5e-16221261343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                 i n+s r+ t+ kR++g++KK +ELS+LC+++ + +++++ 
  RWR92750.1 221 IANDSSRKATYKKRKKGLMKKVSELSTLCGVNTCAVVYGPG 261
                 89************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MARKKVKLEW IANDSSRKAT YKKRKKGLIK KVCELSTLCD VNACAVIYGP GDRHPEVWPL  60
AGNAQHVVMR FKSLPDMEQS KKMMNQEAFF RQRMTKLKDQ LKKQQRETRQ LEVTMLLHQC  120
LSGKSLQEAS VNDLSELMWV IESEMKKVQE RVEFNQQEKG KRMLKMKEEE EGRTTTTALE  180
EVVAMEMEAL QKQQWFMDVL NQQDHMGLLT MSRKKVKLAW IANDSSRKAT YKKRKKGLMK  240
KVSELSTLCG VNTCAVVYGP GDRQPEVWPS SVDAEDVAMR FKSLPEMEKS KKMLNQEAFL  300
RQRMAKLKDQ LKKQLRESRQ LEVTMLLHQC LLGKGLQEAS VDDLSDLSWL IESKMKMVQE  360
RVEFIRASTL AAPKQQMKEE GKVATTSLEE VVAMEMEMLQ RQQWFMDVLN PQDHMVCGGE  420
EMTVPFGDAN PWLGGCYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLEWIANDSSRKATYKKRK
22226KKRKK
3213235RKKVKLEWIANDSSRKATYKKRK
4232236KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-49M-type_MADS family protein